PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_5F17B1022.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 196aa    MW: 23329.8 Da    PI: 8.8696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_5F17B1022.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-1064105347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT +E e++ + v+  G++ Wkt ar++g  +++ ++k+ w+  
  Traes_7BS_5F17B1022.2  64 KWTDDEKEKIRRFVEINGTD-WKTLARELG--KSEIHVKDTWRRM 105
                            8*******************.********8..9*******99975 PP

2Myb_DNA-binding223.8e-07112174147
                            TSSS-HHHHHHHHHHHHH.TTTT..................-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkq.lGgg..................tWktIartmgkgRtlkqcksrwqky 47 
                            +grWT++E++ l d+v++ l  +                  +W++I+ ++  +R  k+c ++w+  
  Traes_7BS_5F17B1022.2 112 KGRWTQDEHQNLFDLVNLdL--RlkahqiknpdhrmlrdniSWEAISDKLT-TRNHKNCCLKWYET 174
                            79**************8532..3346689999******************9.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-461108IPR001005SANT/Myb domain
PROSITE profilePS512949.20263110IPR017930Myb domain
SuperFamilySSF466892.03E-963123IPR009057Homeodomain-like
CDDcd001670.0025564106No hitNo description
Gene3DG3DSA:1.10.10.601.8E-964116IPR009057Homeodomain-like
PfamPF139211.2E-965123No hitNo description
PROSITE profilePS500908.014107175IPR017877Myb-like domain
SuperFamilySSF466896.13E-6108189IPR009057Homeodomain-like
SMARTSM007170.0019111177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-9117177IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEAMRDYAEL KQLGEKGLEM IGSCSKYPEL KGCWDDIAKS LPHRPHEAIY HRARILLYRG  60
AERKWTDDEK EKIRRFVEIN GTDWKTLARE LGKSEIHVKD TWRRMKPKNL KKGRWTQDEH  120
QNLFDLVNLD LRLKAHQIKN PDHRMLRDNI SWEAISDKLT TRNHKNCCLK WYETLASPMV  180
KEGIWSDVDD YLLVEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3630030.0AK363003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977530.11e-106PREDICTED: uncharacterized protein LOC101765490
RefseqXP_004977531.11e-106PREDICTED: uncharacterized protein LOC101765490
TrEMBLW5HU391e-144W5HU39_WHEAT; Uncharacterized protein
TrEMBLW5HHP11e-137W5HHP1_WHEAT; Uncharacterized protein
STRINGSi009752m1e-106(Setaria italica)
STRINGSb07g004330.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-65MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]